GEO4-14217.5 ECTSQ3EnglishMaster
Reactive transport in the hydrosphere
FaculteitFaculty of Geosciences
NiveauMaster
Studiejaar2026-2027
Beschrijving
Course goals
Please note: the information in the course manual is binding.
The course teaches students how to create and use mechanistic and spatially explicit models to study (bio)geochemical processes in the various compartments of the Earth’s hydrosphere including sediments, aquifers, rivers, lakes, and oceans.
By the end of the course, students will
By the end of the course, students will
- have a general understanding of concepts and methods needed to quantitatively describe (bio)geochemical reactions and transport processes in various compartments of the hydrosphere;
- be able to formulate models (conceptually and with mathematical equations) to describe transport and reactions in Earth's surface environments;
- be able to solve models numerically using appropriate modeling software (R, with relevant packages ReacTran & deSolve);
- be able to perform sensitivity analyses to understand model implications;
- be able to interpret the results of the models in the relevant context (e.g., geochemical processes in rivers, lakes, aquifers, sediments, oceans);
- be able to report the results in written and oral forms.
- Ability to work in a team: Practical exercises and group projects will be done in teams of 3-4 students. Students will need to distribute the tasks, organize and execute the workflow, and share responsibility for presentation of the results.
- Written communication skills: results of group projects will be presented as reports. Feedback will be given after report submission.
- Verbal communication skills: results of group projects will also be presented orally, as a group effort. Students will receive feedback on the quality of their presentations.
- Analytical/quantitative skills: Throughout the course students will solve quantitative tasks using numerical methods. They will also interpret their results in the wider environmental context.
- Strong work ethic: Students will be required to follow fixed deadlines for delivering results of group projects.
- Computer skills: Students will write their own code to solve models. This will develop their programming skills in the programming language R. Preparation of written reports and oral presentation will help them develop skills in programs used for word processing and slide shows.
Content
- Model formulation: from conceptual diagrams to differential equations
- Introduction to R
- Spatial components and parameterization of models
- Model solution (using R-packages deSolve and ReacTran)
- Applications and case studies:
- coupled chemical reactions: atmospheric ozone dynamics
- surface reactions: mineral dissolution/precipitation
- acid-base chemistry: pH dynamics
- ecology: aquatic food-webs
- epidemiology: COVID pandemic
- global-scale models: Earth's global carbon cycle
- biogeochemistry in water bodies: anoxia in an estuary
- biogeochemistry in porous media: early diagenesis in sediments
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